Garcia MU, Biomarkers discovery in breast cancer by
Interactome-Transcriptome Integration, 2013/12/20.
Articles
Fellows Yates JA, Lamnidis TC, Borry M, Valtueña AA,
Fagernäs Z, Clayton S, Garcia MU, Neukamm J, Peltzer A, Reproducible, portable, and efficient ancient genome
reconstruction with nf-core/eager, PeerJ 9:e10947.
Garcia MU, Juhos S, Larsson M, Olason PI, Martin M, Eisfeldt
J, DiLorenzo S, Sandgren S, Díaz De Ståhl T, Ewels P, Wirta
V, Nistér M, Käller M, Nystedt B, Sarek: A portable workflow for whole-genome sequencing
analysis of germline and somatic variants [version 2;
peer review: 2 approved], F1000Research (2020), 9:63.
Liu T, Zhao J, Ibarra C, Garcia U. M, Uhlén P, Nistér M, Glycosylation Controls Sodium-Calcium Exchanger 3
Sub-Cellular Localization During Cell Cycle, European Journal of Cell Biology (2018) 97 (3): 190-203.
Bonacci T, Audebert S, Camoin L, Baudelet E, Bidaut G,
Garcia MU, Witzel II, Perkins ND, Borg JP, Iovanna JL,
Soubeyran P, Identification of new mechanisms of cellular response
to chemotherapy by tracking changes in
post-translational modifications by ubiquitin and
ubiquitin-like proteins, Journal of Proteome Research (2014) 13 (5): 2478–2494.
Garcia MU, Millat-Carus R, Bertucci F, Finetti P, Birnbaum
D, Bidaut G, Interactome-transcriptome integration for predicting
distant metastasis in breast cancer, Bioinformatics (2012) 28 (5): 672-678.
Correspondences
Ewels P, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm
A, Garcia MU, Di Tommaso P, Nahnsen S, The nf-core framework for community-curated
bioinformatics pipelines, Nat Biotechnol (2020).
Preprints
Fellows Yates JA, Lamnidis TC, Borry M, Andrades Valtueña A,
Fagneräs Z, Clayton S, Garcia MU, Neukamm J, Peltzer A, Reproducible, portable, and efficient ancient genome
reconstruction with nf-core/eager, bioRxiv 2020.06.11.145615.
Ewels P, Peltzer A, Fillinger S, Alneberg J, Patel H, Wilm
A, Garcia MU, Di Tommaso P, Nahnsen S, nf-core: Community curated bioinformatics pipelines, bioRxiv 610741.
Garcia MU, Juhos S, Larsson M, Olason PI, Martin M, Eisfeldt
J, DiLorenzo S, Sandgren J, Diaz de Ståhl T, Wirta V, Nistér
M, Nystedt B, Käller M, Sarek: A portable workflow for whole-genome sequencing
analysis of germline and somatic variants, bioRxiv 316976.
Chapters
Garcia MU, Millat-Carus R, Bertucci F, Finetti P, Guille A,
Adelaïde J, Bekhouche I, Sabatier R, Chaffanet M, Birnbaum
D, Bidaut G, CNV-Interactome-Transcriptome Integration to detect
driver genes in cancerology in Microarray Image and Data Analysis: Theory and Practice,
CRC Press (2014) 12: 331-338.
Garcia MU, Finetti P, Birnbaum D, Bertucci F, Bidaut G, Detection of driver protein complexes in breast cancer
metastasis by large scale transcriptome-interactome
integration,
Methods in Molecular Biology (2014) 1101: 67-85.
Garcia MU, Stahl O, Finetti P, Birnbaum D, Bertucci F,
Bidaut G, Linking Interactome to Disease: A Network-Based
Analysis of Metastatic Relapse in Breast Cancer
in Bioinformatics: Concepts, Methodologies, Tools, and
Applications. IGI Global, (2013): 151-172.
Garcia MU, Stahl O, Finetti P, Birnbaum D, Bertucci F,
Bidaut G, Linking Interactome to Disease: A Network-Based
Analysis of Metastatic Relapse in Breast Cancer in Handbook of Research on Computational and Systems Biology:
Interdisciplinary Applications, IGI Global (2011): 406-427.
Talks
Garcia MU, CbioNet - What is nf-core?, online,
2022/04.
Garcia MU, nf-core/bytesize #34 - Bytesize 34: Updates on the new
DSL2 syntax Talk, online, 2022/02.
nf-core/bytesize #34
Garcia MU, nf-core/bytesize #18 - Development Environments and
Workflows, online, 2021/06.
nf-core/bytesize #18
Garcia MU, Sarek, A portable workflow for WGS/WES analysis of
germline and somatic mutations, Stockholm, Sweden, 2018/10. FoUU-day for clinical
pathology-cytology
Garcia MU, Sarek, a portable workflow for WGS analysis of germline
and somatic mutations, Marseille, France, 2018/07.
JOBIM 2018
Garcia MU, Sarek and nf-core for Reproducibility,
Basel, Switzerland, 2018/03. SPHN Workflow Interoperability
Workshop
Garcia MU, Biomarkers Discovery in Breast Cancer by
Interactome-Transcriptome Integration, Vienna, Austria, 2011/04.
MASAMB XXI
Garcia MU, Biomarkers Discovery in Breast Cancer by
Interactome-Transcriptome Integration, Cambridge, UK, 2010/09. Cancer Bioinformatics Workshop videolectures.net
Posters
Garcia MU, Juhos S, Larsson M, Diaz de Ståhl T, Sandgren S,
Eisfeldt J, DiLorenzo S, M Martin, Olason P, Ewels P,
Nystedt B, Nistér M, Käller M, Sarek, a workflow for WGS analysis of germline and
somatic mutations, Stockholm, Sweden, 2018/08.
Department Kick Off 2018
Garcia MU, Juhos S, Larsson M, Diaz de Ståhl T, Sandgren S,
Eisfeldt J, DiLorenzo S, M Martin, Olason P, Ewels P,
Nystedt B, Nistér M, Käller M, Sarek, a workflow for WGS analysis of germline and
somatic mutations, Reykjavìk, Iceland, 2018/06.
The Nordic Precision Medicine Initiative
Garcia MU, Juhos S, Larsson M, Diaz de Ståhl T, Sandgren S,
Eisfeldt J, DiLorenzo S, M Martin, Olason P, Ewels P,
Nystedt B, Nistér M, Käller M, Sarek, a workflow for WGS analysis of germline and
somatic mutations, Stockholm, Sweden, 2018/05.
Keystone Symposia - Precision Medicine in Cancer (E1)
Garcia MU, Juhos S, Larsson M, Diaz de Ståhl T, Sandgren S,
Eisfeldt J, DiLorenzo S, M Martin, Olason P, Ewels P,
Nystedt B, Nistér M, Käller M, Sarek, a workflow for WGS analysis of germline and
somatic mutations, Stockholm, Sweden, 2018/03.
Frontiers in Cancer Research and Therapy 2018
Garcia MU, Juhos S, Larsson M, Diaz de Ståhl T, Sandgren S,
Eisfeldt J, DiLorenzo S, M Martin, Olason P, Nystedt B,
Nistér M, Käller M, Cancer Analysis Workflow to process normal/tumor WGS
data, Stockholm, Sweden, 2017/08.
Department Kick Off 2017
Garcia MU, Juhos S, Larsson M, Diaz de Ståhl T, Sandgren S,
Eisfeldt J, DiLorenzo S, M Martin, Olason P, Nystedt B,
Nistér M, Käller M, Cancer Analysis Workflow to process normal/tumor WGS
data, Copenhagen, Denmark, 2017/05.
European Human Genetics Conference 2017
Garcia MU, Sahlén P, Diaz de Ståhl T, Eisfeldt J, Juhos S,
DiLorenzo S, Larsson M, Olason P, Nystedt B, Nistér M,
Käller M, Cancer Analysis Workflow Of Tumor/Normal Pairs At The
National Genomics Infrastructure, Stockholm, Sweden, 2017/02.
Frontiers in Cancer Research and Therapy 2017
Garcia MU, Sahlén P, Diaz de Ståhl T, Eisfeldt J, Juhos S,
DiLorenzo S, Larsson M, Olason P, Nystedt B, Nistér M,
Käller M, Cancer Analysis Workflow Of Tumor/Normal Pairs At The
National Genomics Infrastructure, Djurö, Sweden, 2016/09.
The XVth KICancer Retreat 2016
Garcia MU, Parent MA, Benoukraf T, Visualizing the DNA/DNA interactome using ChromoLens, Singapore, Singapore, 2013/11.
Frontiers in Cancer Science 2013
Garcia MU, Millat-Carus R, Finetti P, Birnbaum D, Bertucci
F, Bidaut G, Interactome-Transcriptome Integration Uncovers More
Stable and Better Performing Biomarkers in Breast Cancer, Basel, Switzerland, 2012/09.
ECCB 2012 -
F1000
Garcia MU, Millat-Carus R, Finetti P, Birnbaum D, Bertucci
F, Bidaut G, Interactome-Transcriptome Integration Uncovers More
Stable and Better Performing Biomarkers in Breast
Cancer,
Rennes, France, 2012/07.
JOBIM 2012
Garcia MU, Millat-Carus R, Finetti P, Birnbaum D, Bertucci
F, Bidaut G, Interactome-Transcriptome Integration Uncovers More
Stable and Better Performing Biomarkers in Breast
Cancer,
Marseille, France, 2012/02.
6ème Colloque du Cancéropôle PACA
Garcia MU, Stahl O, Finetti P, Birnbaum D, Bertucci F,
Bidaut G, Biomarkers Discovery in Breast Cancer by
Interactome-Transcriptome Integration, Paris, France, 2011/07.
JOBIM 2011
Garcia MU, Stahl O, Finetti P, Birnbaum D, Bertucci F,
Bidaut G, Biomarkers Discovery in Breast Cancer by
Interactome-Transcriptome Integration, Marseille, France, 2011/06.
19th meeting of doctoral school
Garcia MU, Stahl O, Finetti P, Birnbaum D, Bertucci F,
Bidaut G, Biomarkers Discovery in Breast Cancer by
Interactome-Transcriptome Integration, Marseille, France, 2010/12.
BCP VII
Colette Y, Betzi S, Garcia MU, La Chimie - base du Vivant, au service de la Recherche
en Cancérologie, Marseille, France, 2011/10.
Fête de la Science - Marché de la chimie