Garcia, Maxime Ulysse, Biomarkers discovery in breast cancer by Interactome-Transcriptome Integration, 2013-12-20.
Articles
Langer, Björn E et al., Empowering bioinformatics communities with Nextflow and nf-core, Genome Biology, vol. 26, no. 1, pp. 228, 2025.
Fellows Yates, James A. et al., Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager, PeerJ, vol. 9, pp. e10947, 2021.
Garcia, Maxime U. et al., Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants [version 2; peer review: 2 approved], F1000Research, vol. 9, pp. 63, 2020.
Ewels, Philip et al., The nf-core framework for community-curated bioinformatics pipelines, Nature Biotechnology, 2020.
Fellows Yates, James A. et al., Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager, bioRxiv, 2020.
Ewels, Philip et al., nf-core: Community curated bioinformatics pipelines, bioRxiv, 2019.
Liu, Tian et al., Glycosylation Controls Sodium-Calcium Exchanger 3 Sub-Cellular Localization During Cell Cycle, European Journal of Cell Biology, vol. 97, no. 3, pp. 190--203, 2018.
Garcia, Maxime U. et al., Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants, bioRxiv, 2018.
Bonacci, Thomas et al., Identification of new mechanisms of cellular response to chemotherapy by tracking changes in post-translational modifications by ubiquitin and ubiquitin-like proteins, Journal of Proteome Research, vol. 13, no. 5, pp. 2478--2494, 2014.
Garcia, Maxime U. et al., CNV-Interactome-Transcriptome Integration to detect driver genes in cancerology, Microarray Image and Data Analysis: Theory and Practice, pp. 331--338, 2014.
Garcia, Maxime U. et al., Detection of driver protein complexes in breast cancer metastasis by large scale transcriptome-interactome integration, Methods in Molecular Biology, vol. 1101, pp. 67--85, 2014.
Garcia, Maxime U. et al., Linking Interactome to Disease: A Network-Based Analysis of Metastatic Relapse in Breast Cancer, Bioinformatics: Concepts, Methodologies, Tools, and Applications, pp. 151--172, 2013.
Garcia, Maxime U. et al., Interactome-transcriptome integration for predicting distant metastasis in breast cancer, Bioinformatics, vol. 28, no. 5, pp. 672--678, 2012.
Garcia, Maxime U. et al., Linking Interactome to Disease: A Network-Based Analysis of Metastatic Relapse in Breast Cancer, Handbook of Research on Computational and Systems Biology: Interdisciplinary Applications, pp. 406--427, 2011.
Talks
Garcia, Maxime U., CbioNet - What is nf-core?, Online, 2022-04.
Garcia, Maxime U., nf-core/bytesize #34 - Bytesize 34: Updates on the new DSL2 syntax Talk, Online, 2022-02.nf-core/bytesize #34
Garcia, Maxime U., nf-core/bytesize #18 - Development Environments and Workflows, Online, 2021-06.nf-core/bytesize #18
Garcia, Maxime U., Sarek, A portable workflow for WGS/WES analysis of germline and somatic mutations, FoUU-day for clinical pathology-cytology, Stockholm, Sweden, 2018-10.
Garcia, Maxime U., Sarek, a portable workflow for WGS analysis of germline and somatic mutations, Marseille, France, 2018-07.JOBIM 2018
Garcia, Maxime U., Sarek and nf-core for Reproducibility, SPHN Workflow Interoperability Workshop, Basel, Switzerland, 2018-03.
Garcia, Maxime U., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration, Vienna, Austria, 2011-04.MASAMB XXI
Garcia, Maxime U., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration, Cancer Bioinformatics Workshop, Cambridge, UK, 2010-09.
Posters
Garcia, Maxime U. et al., Sarek, a workflow for WGS analysis of germline and somatic mutations, Stockholm, Sweden, 2018-08.Department Kick Off 2018
Garcia, Maxime U. et al., Sarek, a workflow for WGS analysis of germline and somatic mutations, Reykjavik, Iceland, 2018-06.The Nordic Precision Medicine Initiative
Garcia, Maxime U. et al., Sarek, a workflow for WGS analysis of germline and somatic mutations, Keystone Symposia - Precision Medicine in Cancer (E1), Stockholm, Sweden, 2018-05.
Garcia, Maxime U. et al., Cancer Analysis Workflow to process normal/tumor WGS data, Stockholm, Sweden, 2017-08.Department Kick Off 2017
Garcia, Maxime U. et al., Cancer Analysis Workflow to process normal/tumor WGS data, European Human Genetics Conference 2017, Copenhagen, Denmark, 2017-05.
Garcia, Maxime U. et al., Cancer Analysis Workflow Of Tumor/Normal Pairs At The National Genomics Infrastructure, Stockholm, Sweden, 2017-02.Frontiers in Cancer Research and Therapy 2017
Garcia, Maxime U. et al., Cancer Analysis Workflow Of Tumor/Normal Pairs At The National Genomics Infrastructure, Djuro, Sweden, 2016-09.The XVth KICancer Retreat 2016
Garcia, Maxime U. et al., Visualizing the DNA/DNA interactome using ChromoLens, Frontiers in Cancer Science 2013, Singapore, Singapore, 2013-11.
Garcia, Maxime U. et al., Interactome-Transcriptome Integration Uncovers More Stable and Better Performing Biomarkers in Breast Cancer, Basel, Switzerland, 2012-09.ECCB 2012
Garcia, Maxime U. et al., Interactome-Transcriptome Integration Uncovers More Stable and Better Performing Biomarkers in Breast Cancer, Rennes, France, 2012-07.JOBIM 2012
Garcia, Maxime U. et al., Interactome-Transcriptome Integration Uncovers More Stable and Better Performing Biomarkers in Breast Cancer, Marseille, France, 2012-02.6eme Colloque du Canceropole PACA
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration, Paris, France, 2011-07.JOBIM 2011
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration, 19th meeting of doctoral school, Marseille, France, 2011-06.
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration, BCP VII, Marseille, France, 2010-12.
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration, Interactomics: at the crossroads of biology and bioinformatics, St Raphael, France, 2010-04.
Outreach
Colette, Yves et al., La Chimie - base du Vivant, au service de la Recherche en Cancerologie, Marseille, France, 2011-10.Fete de la Science - Marche de la chimie