Garcia, Maxime Ulysse, Biomarkers discovery in breast cancer by Interactome-Transcriptome Integration , 2013-12-20.
Articles
Langer, Björn E et al., Empowering bioinformatics communities with Nextflow and nf-core , Genome Biology, vol. 26, no. 1, pp. 228 , 2025.
Fellows Yates, James A. et al., Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager , PeerJ, vol. 9, pp. e10947 , 2021.
Garcia, Maxime U. et al., Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants [version 2; peer review: 2 approved] , F1000Research, vol. 9, pp. 63 , 2020.
Ewels, Philip et al., The nf-core framework for community-curated bioinformatics pipelines , Nature Biotechnology , 2020.
Fellows Yates, James A. et al., Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager , bioRxiv , 2020.
Ewels, Philip et al., nf-core: Community curated bioinformatics pipelines , bioRxiv , 2019.
Liu, Tian et al., Glycosylation Controls Sodium-Calcium Exchanger 3 Sub-Cellular Localization During Cell Cycle , European Journal of Cell Biology, vol. 97, no. 3, pp. 190--203 , 2018.
Garcia, Maxime U. et al., Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants , bioRxiv , 2018.
Bonacci, Thomas et al., Identification of new mechanisms of cellular response to chemotherapy by tracking changes in post-translational modifications by ubiquitin and ubiquitin-like proteins , Journal of Proteome Research, vol. 13, no. 5, pp. 2478--2494 , 2014.
Garcia, Maxime U. et al., CNV-Interactome-Transcriptome Integration to detect driver genes in cancerology , Microarray Image and Data Analysis: Theory and Practice, pp. 331--338 , 2014.
Garcia, Maxime U. et al., Detection of driver protein complexes in breast cancer metastasis by large scale transcriptome-interactome integration , Methods in Molecular Biology, vol. 1101, pp. 67--85 , 2014.
Garcia, Maxime U. et al., Linking Interactome to Disease: A Network-Based Analysis of Metastatic Relapse in Breast Cancer , Bioinformatics: Concepts, Methodologies, Tools, and Applications, pp. 151--172 , 2013.
Garcia, Maxime U. et al., Interactome-transcriptome integration for predicting distant metastasis in breast cancer , Bioinformatics, vol. 28, no. 5, pp. 672--678 , 2012.
Garcia, Maxime U. et al., Linking Interactome to Disease: A Network-Based Analysis of Metastatic Relapse in Breast Cancer , Handbook of Research on Computational and Systems Biology: Interdisciplinary Applications, pp. 406--427 , 2011.
Talks
Garcia, Maxime U., CbioNet - What is nf-core? , Online , 2022-04.
Garcia, Maxime U., nf-core/bytesize #34 - Bytesize 34: Updates on the new DSL2 syntax Talk , Online , 2022-02.
nf-core/bytesize #34
Garcia, Maxime U., nf-core/bytesize #18 - Development Environments and Workflows , Online , 2021-06.
nf-core/bytesize #18
Garcia, Maxime U., Sarek, A portable workflow for WGS/WES analysis of germline and somatic mutations , FoUU-day for clinical pathology-cytology, Stockholm, Sweden , 2018-10.
Garcia, Maxime U., Sarek, a portable workflow for WGS analysis of germline and somatic mutations , Marseille, France , 2018-07.
JOBIM 2018
Garcia, Maxime U., Sarek and nf-core for Reproducibility , SPHN Workflow Interoperability Workshop, Basel, Switzerland , 2018-03.
Garcia, Maxime U., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration , Vienna, Austria , 2011-04.
MASAMB XXI
Garcia, Maxime U., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration , Cancer Bioinformatics Workshop, Cambridge, UK , 2010-09.
Posters
Garcia, Maxime U. et al., Sarek, a workflow for WGS analysis of germline and somatic mutations , Stockholm, Sweden , 2018-08.
Department Kick Off 2018
Garcia, Maxime U. et al., Sarek, a workflow for WGS analysis of germline and somatic mutations , Keystone Symposia - Precision Medicine in Cancer (E1), Stockholm, Sweden , 2018-05.
Garcia, Maxime U. et al., Cancer Analysis Workflow to process normal/tumor WGS data , Stockholm, Sweden , 2017-08.
Department Kick Off 2017
Garcia, Maxime U. et al., Cancer Analysis Workflow to process normal/tumor WGS data , European Human Genetics Conference 2017, Copenhagen, Denmark , 2017-05.
Garcia, Maxime U. et al., Cancer Analysis Workflow Of Tumor/Normal Pairs At The National Genomics Infrastructure , Stockholm, Sweden , 2017-02.
Frontiers in Cancer Research and Therapy 2017
Garcia, Maxime U. et al., Cancer Analysis Workflow Of Tumor/Normal Pairs At The National Genomics Infrastructure , Djuro, Sweden , 2016-09.
The XVth KICancer Retreat 2016
Garcia, Maxime U. et al., Visualizing the DNA/DNA interactome using ChromoLens , Frontiers in Cancer Science 2013, Singapore, Singapore , 2013-11.
Garcia, Maxime U. et al., Interactome-Transcriptome Integration Uncovers More Stable and Better Performing Biomarkers in Breast Cancer , Basel, Switzerland , 2012-09.
ECCB 2012
Garcia, Maxime U. et al., Interactome-Transcriptome Integration Uncovers More Stable and Better Performing Biomarkers in Breast Cancer , Rennes, France , 2012-07.
JOBIM 2012
Garcia, Maxime U. et al., Interactome-Transcriptome Integration Uncovers More Stable and Better Performing Biomarkers in Breast Cancer , Marseille, France , 2012-02.
6eme Colloque du Canceropole PACA
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration , Paris, France , 2011-07.
JOBIM 2011
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration , 19th meeting of doctoral school, Marseille, France , 2011-06.
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration , BCP VII, Marseille, France , 2010-12.
Garcia, Maxime U. et al., Biomarkers Discovery in Breast Cancer by Interactome-Transcriptome Integration , Interactomics: at the crossroads of biology and bioinformatics, St Raphael, France , 2010-04.