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AMI 1 • AWS 4 • Article 2 • BRCA1 1 • Beamer 8 • Bookmarklet 1 • CAW 6 • CI 1 • Cancer 1 • Code 1 • Conda 1 • Containers 13 • DNAClub 2 • DNS 1 • Docker 3 • JOBIM 2 • JavaScript 1 • Jekyll 1 • LaTeX 6 • Mendeley 1 • Nextflow 23 • Presentation 21 • Reading 2 • Sarek 15 • Science 1 • Sentieon 1 • Singularity 5 • Tips 8 • Zimmer 1 • bytesize 2 • configs 2 • nf core 12 • offline 1 • rnafusion 3 • tutorial 1
AMI 1
  • • 2018-11-05: How to make a bigger custom AMI?
AWS 4
  • • 2018-01-31: CAW with AWS Batch!
  • • 2018-11-05: How to make a bigger custom AMI?
  • • 2017-11-16: Running CAW with AWS Batch
  • • 2018-02-20: Sarek with AWS Batch!
Article 2
  • • 2017-09-18: Amazing Story!
  • • 2017-09-07: Good read of the day!
BRCA1 1
  • • 2017-09-18: Amazing Story!
Beamer 8
  • • 2018-11-10: Analysing WGS data
  • • 2018-01-31: CAW with AWS Batch!
  • • 2017-08-30: CAW with Singularity!
  • • 2018-06-04: Sarek presentation at JOBIM 2018
  • • 2019-01-30: Sarek presentation at the DNA club
  • • 2018-09-05: Sarek presentation at the DNA club
  • • 2018-02-20: Sarek with AWS Batch!
  • • 2017-09-11: Updates on the Singularity presentation!
Bookmarklet 1
  • • 2013-10-31: Access it
CAW 6
  • • 2018-01-31: CAW with AWS Batch!
  • • 2017-08-30: CAW with Singularity!
  • • 2018-02-14: New project, new logo!
  • • 2017-11-16: Running CAW with AWS Batch
  • • 2017-11-15: Running CAW with Singularity
  • • 2017-09-11: Updates on the Singularity presentation!
CI 1
  • • 2020-05-28: CI⋆Joe - Make your code great again
Cancer 1
  • • 2017-09-18: Amazing Story!
Code 1
  • • 2020-05-28: CI⋆Joe - Make your code great again
Conda 1
  • • 2019-01-30: Sarek presentation at the DNA club
Containers 13
  • • 2018-11-10: Analysing WGS data
  • • 2018-01-31: CAW with AWS Batch!
  • • 2017-08-30: CAW with Singularity!
  • • 2017-10-20: Docker DNS problems
  • • 2018-11-05: How to make a bigger custom AMI?
  • • 2018-02-14: New project, new logo!
  • • 2017-11-16: Running CAW with AWS Batch
  • • 2017-11-15: Running CAW with Singularity
  • • 2018-06-04: Sarek presentation at JOBIM 2018
  • • 2019-01-30: Sarek presentation at the DNA club
  • • 2018-09-05: Sarek presentation at the DNA club
  • • 2018-02-20: Sarek with AWS Batch!
  • • 2017-09-11: Updates on the Singularity presentation!
DNAClub 2
  • • 2019-01-30: Sarek presentation at the DNA club
  • • 2018-09-05: Sarek presentation at the DNA club
DNS 1
  • • 2017-10-20: Docker DNS problems
Docker 3
  • • 2017-10-20: Docker DNS problems
  • • 2018-11-05: How to make a bigger custom AMI?
  • • 2017-11-16: Running CAW with AWS Batch
JOBIM 2
  • • 2018-06-04: Sarek presentation at JOBIM 2018
  • • 2020-07-01: nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
JavaScript 1
  • • 2013-10-31: Access it
Jekyll 1
  • • 2017-05-23: Welcome to my new website!
LaTeX 6
  • • 2017-10-22: Fancy underline in LaTeX
  • • 2012-10-23: Label is after caption!
  • • 2013-01-04: Problem with redefined section
  • • 2012-11-13: Problem with slashed O!
  • • 2013-05-06: Problems between acronym and Hyperref
  • • 2012-12-18: Shift with minitoc!
    14
Mendeley 1
  • • 2012-11-13: Problem with slashed O!
Nextflow 23
  • • 2019-11-21: Adding a Sarek specific config for a specific system
  • • 2018-11-10: Analysing WGS data
  • • 2021-02-24: BFG Unimi Master course
  • • 2018-01-31: CAW with AWS Batch!
  • • 2017-08-30: CAW with Singularity!
  • • 2021-02-09: How nf-core/configs work
  • • 2018-11-05: How to make a bigger custom AMI?
  • • 2018-02-14: New project, new logo!
  • • 2017-11-16: Running CAW with AWS Batch
  • • 2017-11-15: Running CAW with Singularity
  • • 2021-04-13: Running pipelines offline
  • • 2020-10-22: Sarek and rnafusion
  • • 2020-09-16: Sarek and rnafusion, to detect variants and fusion genes
  • • 2020-02-18: Sarek and rnafusion, to detect variants and fusion genes
  • • 2018-06-04: Sarek presentation at JOBIM 2018
  • • 2019-01-30: Sarek presentation at the DNA club
  • • 2018-09-05: Sarek presentation at the DNA club
  • • 2018-02-20: Sarek with AWS Batch!
  • • 2020-10-28: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-09-18: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-07-17: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2019-10-04: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2017-09-11: Updates on the Singularity presentation!
Presentation 21
  • • 2018-11-10: Analysing WGS data
  • • 2021-02-24: BFG Unimi Master course
  • • 2018-01-31: CAW with AWS Batch!
  • • 2017-08-30: CAW with Singularity!
  • • 2020-05-28: CI⋆Joe - Make your code great again
  • • 2021-02-09: How nf-core/configs work
  • • 2021-05-08: Post-thesis career
  • • 2021-04-13: Running pipelines offline
  • • 2020-10-22: Sarek and rnafusion
  • • 2020-09-16: Sarek and rnafusion, to detect variants and fusion genes
  • • 2020-02-18: Sarek and rnafusion, to detect variants and fusion genes
  • • 2018-06-04: Sarek presentation at JOBIM 2018
  • • 2019-01-30: Sarek presentation at the DNA club
  • • 2018-09-05: Sarek presentation at the DNA club
  • • 2018-02-20: Sarek with AWS Batch!
  • • 2020-10-28: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-09-18: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-07-17: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2019-10-04: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2017-09-11: Updates on the Singularity presentation!
  • • 2020-07-01: nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
Reading 2
  • • 2017-09-18: Amazing Story!
  • • 2017-09-07: Good read of the day!
Sarek 15
  • • 2019-11-21: Adding a Sarek specific config for a specific system
  • • 2018-11-10: Analysing WGS data
  • • 2018-11-05: How to make a bigger custom AMI?
  • • 2018-02-14: New project, new logo!
  • • 2020-10-22: Sarek and rnafusion
  • • 2020-09-16: Sarek and rnafusion, to detect variants and fusion genes
  • • 2020-02-18: Sarek and rnafusion, to detect variants and fusion genes
  • • 2018-06-04: Sarek presentation at JOBIM 2018
  • • 2019-01-30: Sarek presentation at the DNA club
  • • 2018-09-05: Sarek presentation at the DNA club
  • • 2018-02-20: Sarek with AWS Batch!
  • • 2020-10-28: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-09-18: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-07-17: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2019-10-04: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
Science 1
  • • 2017-09-07: Good read of the day!
Sentieon 1
  • • 2019-11-21: Adding a Sarek specific config for a specific system
Singularity 5
  • • 2018-01-31: CAW with AWS Batch!
  • • 2017-08-30: CAW with Singularity!
  • • 2018-02-14: New project, new logo!
  • • 2017-11-15: Running CAW with Singularity
  • • 2017-09-11: Updates on the Singularity presentation!
Tips 8
  • • 2013-10-31: Access it
  • • 2017-10-20: Docker DNS problems
  • • 2017-10-22: Fancy underline in LaTeX
  • • 2012-10-23: Label is after caption!
  • • 2013-01-04: Problem with redefined section
  • • 2012-11-13: Problem with slashed O!
  • • 2013-05-06: Problems between acronym and Hyperref
  • • 2012-12-18: Shift with minitoc!
    14
Zimmer 1
  • • 2017-09-07: Good read of the day!
bytesize 2
  • • 2021-02-09: How nf-core/configs work
  • • 2021-04-13: Running pipelines offline
configs 2
  • • 2021-02-24: BFG Unimi Master course
  • • 2021-02-09: How nf-core/configs work
nf core 12
  • • 2019-11-21: Adding a Sarek specific config for a specific system
  • • 2021-02-24: BFG Unimi Master course
  • • 2021-02-09: How nf-core/configs work
  • • 2021-04-13: Running pipelines offline
  • • 2020-10-22: Sarek and rnafusion
  • • 2020-09-16: Sarek and rnafusion, to detect variants and fusion genes
  • • 2020-02-18: Sarek and rnafusion, to detect variants and fusion genes
  • • 2020-10-28: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-09-18: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-07-17: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2019-10-04: Sarek, a workflow to detect germline and somatic mutations in WGS/WES
  • • 2020-07-01: nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
offline 1
  • • 2021-04-13: Running pipelines offline
rnafusion 3
  • • 2020-10-22: Sarek and rnafusion
  • • 2020-09-16: Sarek and rnafusion, to detect variants and fusion genes
  • • 2020-02-18: Sarek and rnafusion, to detect variants and fusion genes
tutorial 1
  • • 2021-02-24: BFG Unimi Master course
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