Tags

ami1

2018-11-05How to make a bigger custom AMI?

article2

2017-09-18Amazing Story!
2017-09-07Good read of the day!

aws4

2018-11-05How to make a bigger custom AMI?
2018-02-20Sarek with AWS Batch!
2018-01-31CAW with AWS Batch!
2017-11-16Running CAW with AWS Batch

beamer7

2019-01-30Sarek presentation at the DNA club
2018-11-10Analysing WGS data
2018-09-05Sarek presentation at the DNA club
2018-06-04Sarek presentation at JOBIM 2018
2018-02-20Sarek with AWS Batch!
2018-01-31CAW with AWS Batch!
2017-08-30CAW with Singularity!

bookmarklet1

2013-10-31Access it

brca11

2017-09-18Amazing Story!

bytesize2

2021-04-13Running pipelines offline
2021-02-09How nf-core/configs work

cancer1

2017-09-18Amazing Story!

caw5

ci1

2020-05-28CI⋆Joe - Make your code great again

code1

2020-05-28CI⋆Joe - Make your code great again

community1

2017–presentnf-core

conda1

2019-01-30Sarek presentation at the DNA club

configs2

2021-02-24BFG Unimi Master course
2021-02-09How nf-core/configs work

containers12

2019-01-30Sarek presentation at the DNA club
2018-11-10Analysing WGS data
2018-11-05How to make a bigger custom AMI?
2018-09-05Sarek presentation at the DNA club
2018-06-04Sarek presentation at JOBIM 2018
2018-02-20Sarek with AWS Batch!
2018-02-14New project, new logo!
2018-01-31CAW with AWS Batch!
2017-11-16Running CAW with AWS Batch
2017-11-15Running CAW with Singularity
2017-10-20Docker DNS problems
2017-08-30CAW with Singularity!

data-retrieval1

2023–presentnf-core/fetchngs

dnaclub3

2019-01-30Sarek presentation at the DNA club
2018-09-05Sarek presentation at the DNA club
2018-01-31CAW with AWS Batch!

dns1

2017-10-20Docker DNS problems

docker3

2018-11-05How to make a bigger custom AMI?
2017-11-16Running CAW with AWS Batch
2017-10-20Docker DNS problems

javascript1

2013-10-31Access it

jekyll1

2017-05-23Welcome to my new website!

jobim2

2020-07-01nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
2018-06-04Sarek presentation at JOBIM 2018

latex6

2017-10-22Fancy underline in LaTeX
2013-05-06Problems between acronym and Hyperref
2013-01-04Problem with redefined section
2012-12-18Shift with minitoc!
2012-11-13Problem with slashed O!
2012-10-23Label is after caption!

mendeley1

2012-11-13Problem with slashed O!

method1

2009–2013Interactome-Transcriptome Integration

nextflow30

2024–presentnf-core/seqinspector
2023–presentnf-core/createpanelrefs
2023–presentnf-core/references
2023–presentnf-core/fetchngs
2023–presentnf-core/demultiplex
2021–presentnf-core/rnavar
2017–presentnf-core/rnafusion
2016–presentnf-core/sarek
2021-04-13Running pipelines offline
2021-02-24BFG Unimi Master course
2021-02-09How nf-core/configs work
2020-10-28Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-10-22Sarek and rnafusion
2020-09-18Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-09-16Sarek and rnafusion, to detect variants and fusion genes
2020-07-17Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-02-18Sarek and rnafusion, to detect variants and fusion genes
2019-11-21Adding a Sarek specific config for a specific system
2019-10-04Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2019-01-30Sarek presentation at the DNA club
2018-11-10Analysing WGS data
2018-11-05How to make a bigger custom AMI?
2018-09-05Sarek presentation at the DNA club
2018-06-04Sarek presentation at JOBIM 2018
2018-02-20Sarek with AWS Batch!
2018-02-14New project, new logo!
2018-01-31CAW with AWS Batch!
2017-11-16Running CAW with AWS Batch
2017-11-15Running CAW with Singularity
2017-08-30CAW with Singularity!

nf-core23

2025–presentnf-core-utils
2024–presentnf-core/seqinspector
2024–presentnft-utils
2023–presentnf-core/createpanelrefs
2023–presentnf-core/references
2023–presentnf-core/fetchngs
2023–presentnf-core/demultiplex
2021–presentnf-core/rnavar
2017–presentnf-core
2017–presentnf-core/rnafusion
2016–presentnf-core/sarek
2021-04-13Running pipelines offline
2021-02-24BFG Unimi Master course
2021-02-09How nf-core/configs work
2020-10-28Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-10-22Sarek and rnafusion
2020-09-18Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-09-16Sarek and rnafusion, to detect variants and fusion genes
2020-07-17Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-07-01nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
2020-02-18Sarek and rnafusion, to detect variants and fusion genes
2019-11-21Adding a Sarek specific config for a specific system
2019-10-04Sarek, a workflow to detect germline and somatic mutations in WGS/WES

nf-test1

2024–presentnft-utils

offline1

2021-04-13Running pipelines offline

pipeline8

2024–presentnf-core/seqinspector
2023–presentnf-core/createpanelrefs
2023–presentnf-core/references
2023–presentnf-core/fetchngs
2023–presentnf-core/demultiplex
2021–presentnf-core/rnavar
2017–presentnf-core/rnafusion
2016–presentnf-core/sarek

plugin2

2025–presentnf-core-utils
2024–presentnft-utils

preprocessing1

2023–presentnf-core/demultiplex

presentation20

2021-05-08Post-thesis career
2021-04-13Running pipelines offline
2021-02-24BFG Unimi Master course
2021-02-09How nf-core/configs work
2020-10-28Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-10-22Sarek and rnafusion
2020-09-18Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-09-16Sarek and rnafusion, to detect variants and fusion genes
2020-07-17Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-07-01nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
2020-05-28CI⋆Joe - Make your code great again
2020-02-18Sarek and rnafusion, to detect variants and fusion genes
2019-10-04Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2019-01-30Sarek presentation at the DNA club
2018-11-10Analysing WGS data
2018-09-05Sarek presentation at the DNA club
2018-06-04Sarek presentation at JOBIM 2018
2018-02-20Sarek with AWS Batch!
2018-01-31CAW with AWS Batch!
2017-08-30CAW with Singularity!

quality-control1

2024–presentnf-core/seqinspector

reading2

2017-09-18Amazing Story!
2017-09-07Good read of the day!

resource2

2023–presentnf-core/references
2023–presentannotation-cache

rnafusion3

2020-10-22Sarek and rnafusion
2020-09-16Sarek and rnafusion, to detect variants and fusion genes
2020-02-18Sarek and rnafusion, to detect variants and fusion genes

sarek15

2020-10-28Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-10-22Sarek and rnafusion
2020-09-18Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-09-16Sarek and rnafusion, to detect variants and fusion genes
2020-07-17Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2020-02-18Sarek and rnafusion, to detect variants and fusion genes
2019-11-21Adding a Sarek specific config for a specific system
2019-10-04Sarek, a workflow to detect germline and somatic mutations in WGS/WES
2019-01-30Sarek presentation at the DNA club
2018-11-10Analysing WGS data
2018-11-05How to make a bigger custom AMI?
2018-09-05Sarek presentation at the DNA club
2018-06-04Sarek presentation at JOBIM 2018
2018-02-20Sarek with AWS Batch!
2018-02-14New project, new logo!

science1

2017-09-07Good read of the day!

sentieon1

2019-11-21Adding a Sarek specific config for a specific system

singularity4

testing1

2024–presentnft-utils

tips8

2017-10-22Fancy underline in LaTeX
2017-10-20Docker DNS problems
2013-10-31Access it
2013-05-06Problems between acronym and Hyperref
2013-01-04Problem with redefined section
2012-12-18Shift with minitoc!
2012-11-13Problem with slashed O!
2012-10-23Label is after caption!

tutorial1

2021-02-24BFG Unimi Master course

variant-calling4

2023–presentnf-core/createpanelrefs
2021–presentnf-core/rnavar
2017–presentnf-core/rnafusion
2016–presentnf-core/sarek

zimmer1

2017-09-07Good read of the day!