CV

Experience

From 2025	Bioinformatician and System developer in NGI at SciLifeLab • Pipeline development within nf-core, a community effort to collect a curated set of analysis pipelines built using Nextflow. • In the core team that administers the nf-core project
2022-2025	Bioinformatician in Scientific Development at Seqera Labs • Pipeline development within nf-core, a community effort to collect a curated set of analysis pipelines built using Nextflow. • In the core team that administers the nf-core project
2016-2022	Bioinformatician for The Swedish Childhood Tumor Biobank (Barntumörbanken) • Development of Sarek, a Whole Genome/Targeted Sequencing Germline/Somatic analysis workflow in collaboration between two SciLifeLab infrastructures: NGI and NBIS • Development of a rnafusion analysis workflow in collaboration withSciLifeLab infrastructure NGI • In the core team that administers the nf-core project
2013-2014	Research Associate at National University of Singapore, Cancer Science Institute of Singapore
2009-2013	PhD Candidate at Cancer Research Center of Marseille • Development of ITI, a method to analyze gene expression data by superimposition of a large scale protein-protein interaction data (human interactome) over several gene expression datasets

Education

2009	PhD in Bioinformatics and Genomics at Aix-Marseille Université
2007-2009	Master's Degree in Bioinformatics and Genomics (former master BBSG), Faculté des Sciences de Luminy, Marseille
2007	Erasmus Semester in School of Biological Sciences, University of East Anglia, Norwich
2003-2007	Bachelor's Degree in Biology and Biochemistry, Faculté des Sciences de Luminy, Marseille

Computer Skills

ScriptingGroovy, Bash, Perl

PipelineNextflow, Make

WebAstro, Jekyll, Wordpress

CommunicationSlack, LaTeX, Beamer, Inkscape

Project ManagementGithub, Trello

ContainersDocker, Singularity

Web languagesHTML5, CSS3, SASS, JS

OtherLinux, clusters, Git, R

Languages

FrenchMother tongue

EnglishFluent

SwedishBasic

Scientific Societies

• Member of the International Society of Computational Biology (ISCB)

• Member of the French Society of Bioinformatics (Société Française de BioInformatique: SFBI)

• Member of BioInfoDiag (Le Réseau Français de Bioinformatique pour le Diagnostic: BioInfoDiag)

• Member of the French Community of PhDs (La Communauté Française des Docteurs: CFD)

Associations

From 2012	Contributor to Bioinfo-fr.net (French-speaking blog on Bioinformatics)
2012-2014	Vice-president of JeBiF - RSG-France (Association of French Young Bioinformaticians)
2010-2011	President of Hippo'Thèse (Association of young researchers in Biology at Aix-Marseille University)
2010-2011	Vice-president and webmaster of BIOTechno Network (French Network of Associations organizing forums about careers in Biotechnology)
2009-2010	Webmaster of Hippo'Thèse (Association of young researchers in Biology at Aix-Marseille University)

Organization and Events

2015	Journées nationales de la Communauté Française des Docteurs (Webmaster, member of the organizing committee, and logistical support)
2012	Doctoriales en Provence (Member of the organizing committee and logistical support)
2011	Marché de la Chimie @ Fête de la Science (Conception and animation of a stand for Cancéropôle-PACA)
2011	7th BIOTechno forum in Marseille (Head of the organizing committee)
2009-2012	Annual meeting of doctoral school in Biology and Health Sciences from Aix-Marseille University (Member of the organizing committee, abstract selection, jury member, and logistical support)
2007-2011	Logistical support in organizing the Plan de Cuques French Comics Festival

Interests

• Yoga, Cinema, Poker, Gardening, Ice-Skating