CV

Experience

From 2022	Bioinformatician in Scientific Development at Seqera Labs • Pipeline development within nf-core, a community effort to collect a curated set of analysis pipelines built using Nextflow. • In the Core team that administer the nf-core project
2016-2022	Bioinformatician for The Swedish Childhood Tumor Biobank (Barntumörbanken) • Development of Sarek, a Whole Genome/Targeted Sequencing Germline/Somatic analysis workflow in collaboration between two SciLifeLab infrastructures: NGI and NBIS • Development of a rnafusion analysis workflow in collaboration with SciLifeLab infrastructure NGI • In the Core team that administer the nf-core project
2013-2014	Research Associate at National University of Singapore, Cancer Science Institute of Singapore
2009-2013	PhD Candidate at Cancer Research Center of Marseille • Development of ITI, a method to analyze gene expression data by superimposition of a large scale protein-protein interaction data (human interactome) over several gene expression datasets

Education

2009	PhD in Bioinformatics and Genomics at Aix-Marseille Université
2007-2009	Master's Degree in Bioinformatics and Genomics (former master BBSG), Faculté des Sciences de Luminy, Marseille
2007	Erasmus Semester in School of Biological Sciences, University of East Anglia, Norwich
2003-2007	Bachelor's Degree in Biology and Biochemistry, Faculté des Sciences de Luminy, Marseille

Computer Skills

Scripting Groovy, Bash, Perl

Pipeline Nextflow, Make

Web Jekyll, Astro, Wordpress

Communication Slack, LaTeX, Beamer, Inkscape

Project Management Github, Trello

Containers Docker, Singularity

Web languages HTML5, CSS3, SASS, JS

Other Linux, clusters, Git, R

Languages

French Mother tongue

English Fluent

Swedish Notions

Scientific Societies

• Member of the International Society of Computational Biology (ISCB)

• Member of the French Society of Bioinformatics (Société Française de BioInformatique: SFBI)

• Member of BioInfoDiag (Le Réseau Français de Bioinformatique pour le Diagnostic: BioInfoDiag)

• Member of the French Community of PhDs (La Communauté Française des Docteurs: CFD)

Associations

From 2012	Contributor to Bioinfo-fr.net (French-speaking blog on Bioinformatics)
2012-2014	Vice-president of JeBiF - RSG-France (Association of French Young Bioinformaticians)
2010-2011	President of Hippo'Thèse (Association of young researchers in Biology at Aix-Marseille University)
2010-2011	Vice-president and webmaster of BIOTechno Network (French Network of Associations organizing forums about careers in Biotechnology)
2009-2010	Webmaster of Hippo'Thèse (Association of young researchers in Biology at Aix-Marseille University)

Organization and Events

2015	Journées nationales de la Communauté Française des Docteurs (Webmaster, Member of organization committee and logistic support)
2012	Doctoriales en Provence (Member of organization committee and logistic support)
2011	Marché de la Chimie @ Fête de la Science (Conception and animation of a stand for Cancéropôle-PACA)
2011	7th BIOTechno forum in Marseille (Head of organization committee)
2009-2012	Annual meeting of doctoral school in Biology and Health Sciences from Aix-Marseille University (Member of organization committee, abstract selection, jury member, logistic support)
2007-2011	Logistic support in organization of Plan de Cuques French Comics Festival

Interests

• Yoga, Cinema, Poker, Gardening, Ice-Skating